Scaffold Ga0211558_10042849

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10042849
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2273
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000713	Metagenome / Metatranscriptome	925	Y
F006008	Metagenome / Metatranscriptome	384	Y
F029759	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_100428491	F006008	GGAG	MPLVKKRLTIAAGATSEQVLQGTTYEYVDPGTQLIVAAADNSATY
Ga0211558_100428493	F029759	AGG	MFTYIHAFWALFGLNLMVFGWALYAHARVRANEKTLEALDWETLANLTGEVGAMKRSLQKVNNRINGMTASDPVQMLQELPKLQNATQSNGRIGG
Ga0211558_100428496	F000713	N/A	TIAAGATSEQVLQGTTYEYVDPGTQLIVAAADNSGTYSGDVVMNFTVNNAEFAKDATVSEGVSGEAFGWRGGYVMNDMITTGQVRNRPVITFTNNDSSSATIDVAVFIGG