Scaffold Ga0211558_10033646

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10033646
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2597
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F002192	Metagenome / Metatranscriptome	585	Y
F063773	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_100336461	F063773	AGGCGG	MGQEFIIKSPAIEDKINQLLPSQGGFQAGVDISASTTVIPIVDLTE
Ga0211558_100336464	F002192	N/A	MYQIMLYLGTFCAVFAFILSLYACGRVAKVANATKDLDWDAVANMTGDLATTKKTIQTLNNRINGMHSPKLADQELMMQLLQNQQNKPNGKMLGG
Ga0211558_100336466	F000754	N/A	NAEFSKNASVSGLVTGEPFGWNGNYVMNDMVTTGQVRNRPIITFTNGTAATRTIDVAVFIGG