Scaffold Ga0211558_10033266

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10033266
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2612
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F009521	Metagenome / Metatranscriptome	316	Y
F019728	Metagenome	228	Y
F088712	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_100332661	F088712	N/A	PIETKETYNGNQYIMQAGLVKGRNNLLKNGWEYCANGTSLTNGWNTGSYNRFLKCWTFDNHILNQRDVNHTETQSTLKALGWIK
Ga0211558_100332662	F009521	GGTGG	MKYQILINNGTLKGWKAFKGSCLATMQDKYKRLEQQGHKLKLIRAK
Ga0211558_100332667	F019728	N/A	MLTKKELEKNNWTVVPKGVWFGVDYAESHKVNVLDVLTDLLDLDTDVEGYNFVVCAYKKEGGNDE
Ga0211558_100332669	F004603	N/A	MIFSININGNIIDWCYNLDCQDKQYHKTWIPKLRDIQIITKDLNGLTVSEVKKIILEDIQPDITMVKEHNNKLARARRVKA