Scaffold Ga0211558_10033019

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10033019
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2623
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006008	Metagenome / Metatranscriptome	384	Y
F017146	Metagenome / Metatranscriptome	242	Y
F043982	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_100330191	F006008	AGGAG	MPLVKKKLSIAAGATSDQVLAGTTYEYVDPGTRIV
Ga0211558_100330193	F043982	GAG	MHQFLLYSVIFVSLTSFFLALIACARVGNFIKSTDGLDWSSVANITGDLATLKKTIQTLNNRMNGMHSPKVAEQELLMQLMTKQQNQQVNGKLNGG
Ga0211558_100330196	F017146	N/A	NLSLTADFLGISEDALVALLLKRFRNDGPVVTKAALRKTKSTIRKLKNMCDMYDDLRPAARRRTPMRRARSASTTLIKN