NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10011322

Scaffold Ga0211558_10011322


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10011322 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4624
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F000754Metagenome / Metatranscriptome906Y
F001416Metagenome / Metatranscriptome699Y
F002192Metagenome / Metatranscriptome585Y

Sequences

Protein IDFamilyRBSSequence
Ga0211558_100113221F000754N/ARIVVASAVDTAGTASADTTMDFTVNNAEFAKNASVSALVTGEPFGWNGNYVMNDMVTTGQVRNRPIITFTNGTAATRTIDVAVFIGG
Ga0211558_100113225F000613AGGAGMPLVKKRLSVAAGATSDQVLAGTTYEYVDPGTRIVVASAVDTAGTASADTTMDFTVNNAEFAKNASVSALVTGEPFGWNGNYVMNDMVTTGQVRNRPIITFTNGTAATRTIDVAVFIGG
Ga0211558_100113227F002192N/AMHNLLLYSSTFLAILALFIGLYACGRVAKVLNATKDLDWDSIANITGDLATTKKTIQTLNNRINGMHSPKVAEQELMMQLLSNQQNKPNGRIQGG
Ga0211558_100113229F001416AGGAGMPLVKKRLSVAAGATSDQVLAGTTYEYVDPGTRIVVASAVDTAGTASADTTMDFTVNNAE

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