Basic Information | |
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Taxon OID | 3300020439 Open in IMG/M |
Scaffold ID | Ga0211558_10011322 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4624 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → Virus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_141 | |||||||
Coordinates | Lat. (o) | 9.846 | Long. (o) | 80.0607 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000613 | Metagenome / Metatranscriptome | 985 | Y |
F000754 | Metagenome / Metatranscriptome | 906 | Y |
F001416 | Metagenome / Metatranscriptome | 699 | Y |
F002192 | Metagenome / Metatranscriptome | 585 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211558_100113221 | F000754 | N/A | RIVVASAVDTAGTASADTTMDFTVNNAEFAKNASVSALVTGEPFGWNGNYVMNDMVTTGQVRNRPIITFTNGTAATRTIDVAVFIGG |
Ga0211558_100113225 | F000613 | AGGAG | MPLVKKRLSVAAGATSDQVLAGTTYEYVDPGTRIVVASAVDTAGTASADTTMDFTVNNAEFAKNASVSALVTGEPFGWNGNYVMNDMVTTGQVRNRPIITFTNGTAATRTIDVAVFIGG |
Ga0211558_100113227 | F002192 | N/A | MHNLLLYSSTFLAILALFIGLYACGRVAKVLNATKDLDWDSIANITGDLATTKKTIQTLNNRINGMHSPKVAEQELMMQLLSNQQNKPNGRIQGG |
Ga0211558_100113229 | F001416 | AGGAG | MPLVKKRLSVAAGATSDQVLAGTTYEYVDPGTRIVVASAVDTAGTASADTTMDFTVNNAE |
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