Scaffold Ga0211558_10006489

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10006489
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6185
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011846	Metagenome / Metatranscriptome	286	Y
F020003	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_100064891	F011846	N/A	LLEQDPLCYWLVWGETSDGSSMKPFRFLEKPSDEDIKLELGNEYTQMLNFDKTALRKPVECLTWPVYNWDLNQVQVLEVAHISLSRQFAKYGLNKKYSKNLLDWDFELSKIQADMTRYELLIVPRDEDEHDEGQMAKDWKAAERAGFDLSRIVGGGDPFSEG
Ga0211558_100064897	F020003	GAGG	MSSILNGNKYSPEGSRVPTDLLPKAIRYETARARIFERQGNPDQSNDCLRLKRYYERRAMEECIEP