Scaffold Ga0211558

Basic Information
Taxon OID	3300020439 Open in IMG/M
Scaffold ID	Ga0211558_10004217 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020439 Open in IMG/M

Scaffold ID

Ga0211558_10004217 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7625
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (85.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7625

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (85.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_141
Coordinates	Lat. (^o)	9.846	Long. (^o)	80.0607	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_141

Coordinates

Lat. (^o)

9.846

Long. (^o)

80.0607

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010878	Metagenome / Metatranscriptome	298	Y
F018089	Metagenome	237	Y
F030892	Metagenome	184	N
F031659	Metagenome	182	Y
F034356	Metagenome / Metatranscriptome	175	Y
F045156	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1000421716	F034356	AGGAG	MTHNDLRKGMRVQLTPIPMISNLPRFATIMDNMKGITRMVHIEEKNGYFGDMGSVYVNEIKYVLYDNDMPEPVDVSEAHQKKLDTLTSIHWG
Ga0211558_100042172	F045156	N/A	VVALTKFGRFVNNMPHLGGIKFKALHKQKGRLSMRRNQGKPGHVTREEFDKNWDMIFKKGEKNGSKKKKD
Ga0211558_1000421721	F010878	AGGAG	MKIIAWNIGIVREDNTEENIGDVPDWVANVVDEYLNELEEEYET
Ga0211558_100042176	F018089	AGCAGG	MANSNAKTSFSITNPEAVASYGMVRKIASQFSKSPKCPKDIKWGTIHGHFLQKLNDTKNPLTQGQVAKVLSLKALPQADIKAMRSYKKLVNLG
Ga0211558_100042177	F030892	N/A	MENLVHAISETRMERLLNPQMSDHFYTGFNGKYGYRFYEIKVGRKWVYMKSKAHKVRMPLAKFKIRAFLQWRKDSMVDASCKQYEITGKYSRPRAWWKDYGFTYNPKYFEYDRSRLAW
Ga0211558_100042179	F031659	GGAG	MKKPCKNPNAKFNMATIKDSKSRKAIKFNSLDKAKRYLKSKSYRFREAYNHKEERCMFYSSWKFGWVKVSSCKDYLNDTTMEQGTVWKIIKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211558_10004217

Overview

Ecosystem & Geography

Associated Families

Sequences