NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10003613

Scaffold Ga0211558_10003613


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10003613 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8230
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008780Metagenome328Y
F008977Metagenome / Metatranscriptome325Y

Sequences

Protein IDFamilyRBSSequence
Ga0211558_1000361312F008780N/AMKKKHLVTLVRTIKDILYAHRKADWDDKVVVETVAEVITKKFANYMKDQEDLDRMGKTEQDFMIPPGGLNR
Ga0211558_1000361315F008977GAGMEQKEQNEQIIKVLSFILGKLDTLEIEQSKHKEMFYKVRKNLTDANDLINQILDVLEIENPELYNKTMERYENSHVKDLVSTLDKHIAELDDLNDDEVLDLLTQIVGES

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