Scaffold Ga0211558_10002196

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10002196
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10552
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (25.81%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045198	Metagenome / Metatranscriptome	153	Y
F045797	Metagenome / Metatranscriptome	152	Y
F067212	Metagenome	126	Y
F068236	Metagenome / Metatranscriptome	125	Y
F091012	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1000219617	F045198	N/A	MKLEQEHIEAIAMYMADGLEDHLDIVFWDSIATVLDEFDIDYEDIGEISDEDAEAIVTETRWLFSPKQD
Ga0211558_1000219620	F091012	N/A	MDNLWKRLKPAVKSKILAEKDQYPYLVEDVKTQLQNHKFWTDLPIGTCRQVVNFSHNSVFDVPLMEFMYGDLFIKKA
Ga0211558_100021965	F067212	N/A	MQLHCKLCGKDVTMETEFETRPPFRIINNHMCESKRAKLQAARVKALESGYVL
Ga0211558_100021968	F045797	AGGA	MKLIRTVKEDSCIYILEQFADTVISTKWRPYKVGDLPNRFGCLDDGTDKGGLYEWFNYKGYTYVRDER
Ga0211558_100021969	F068236	AGGA	MSETKDRKFTHDQVVEVAGEYLKCKETGKWVSESDVENYETEMLNIEIQQYYEREQDKYY