Scaffold Ga0211558_10001501

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10001501
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12640
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043681	Metagenome / Metatranscriptome	156	Y
F044800	Metagenome / Metatranscriptome	154	Y
F066697	Metagenome	126	Y
F082554	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1000150118	F043681	AGGA	MAITITNITYDKIMTPLRDKLKEEFKGGLPIYFDNQYKDIGTKSLRMYPESQVLQEKRTASYLNLYTIEMDYVIKTYRDDEKALDQMYKDVTRIETVLFNNSNGGNIPYFYAAMPTIEHNIDTDLENVYVSRISVPVLYEEVHERFVRFITSNDKFFVTSDGSFYIVRS
Ga0211558_1000150119	F044800	GAGG	MAVASTNAWKVNVEEAIQRGIKGEFVTSLPVFRSRDFQQRGNQFCILKGEDSEPNNTMYQRLSNDYNLTLEFFMLDHRRNEITVKKFFRTVSRIEEVFYALIDIDPVFSSEITQIIYEDDIEFNGYRKATFSVTVRNIR
Ga0211558_100015012	F066697	GGAGG	MSFDLLLKTQQELHENTTKWNKVIEKIKKINFKKYKSNQTINFIIDDIVKGEFVNEG
Ga0211558_100015016	F082554	GAGG	MMLKLNPEETQVLKYILRSHWVKRLPPAIKEVAFDVKNAMEKPKVVTQEEYVRLNPNWKHCENCDD