Scaffold Ga0211558_10000935

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10000935
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15804
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (86.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030768	Metagenome / Metatranscriptome	184	Y
F050424	Metagenome	145	N
F085729	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1000093518	F085729	AGGA	VWFSQLGFPHMTLEFPYKRQSPVTKRLKTYKNIKQVWEEIELLVENWQDSRFTLGRNLYFHLPLFMNPKWIINDDDYDLMKQYIWTKEFNIPMAQDLDSADAYRLEIFDNIRQELNEITKYMSEKHGR
Ga0211558_1000093522	F050424	GGA	MAITFENIYKNRVIDNIQKLLKENLSSIPVLYDQHRGQESFLIVPESDSFVDYASNVHIREFSTSINYQLRKGGEYTKDNQLNRLTMVAEIVKRILFDNRNLESDNVSQWYSGQVLSVEYTRDEDDETISNAIITFQCNINEVVS
Ga0211558_100009357	F030768	AGGAG	MAFISLKDLMDNVGGQLRLTLKSKGSFRVHEWQGKQSNRFDYEVLKDNQPMTLSATDALHNRIIKSNISVEDDFLLSWEQYKTDEGELRRFWKVEAVEKESANPQFENVKKSVNEFEQQLQKDKALKQQVNTSNTTYTNGARFGMIFNNVVKLYIANGMMWTKEQFVSEFNRVEGWVESCENKPNTPVDNNLARLQEQRIDASSPSNPVVVDEDDLPF