Scaffold Ga0211558_10000261

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10000261
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28123
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (86.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005178	Metagenome / Metatranscriptome	409	Y
F021206	Metagenome	220	Y
F044198	Metagenome	155	N
F051868	Metagenome	143	Y
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1000026119	F021206	AGGAG	MPVTLNQILAMENVLATRKIPSDIVAMAKTKRYSESKQKVITLGEQPLHYVLRILAKEGLDNSWST
Ga0211558_1000026120	F089518	AGG	MEYIIHISKKGGECFAYHSTRDKSELDRLVSKYMRMKDITLEVKKRFIP
Ga0211558_1000026125	F005178	GAGG	MVWVLIWMQLFSTQAVDYYQLGTFATEKECTAALSKAAVMITHKSETVACLEVEVNQ
Ga0211558_1000026126	F044198	GAGG	MQPKDLPCHIRLKYEPTQMQLGKACRLHGKDFKSVADAARYFNVNYSWAAEQVRNGWNTEDFPKKRRKNYD
Ga0211558_1000026140	F051868	AGGA	VSKDNKKTLEQEAQEFIKQEIPSRDIATRDYFAGAALSGLLGSGKYLRSDEIVNQAFCFSCLMLDYKKNKDKSS