Scaffold Ga0211576_10330223

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211576_10330223

Scaffold Ga0211576_10330223

Overview

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10330223 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	788
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)		Depth (m)	45
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009521	Metagenome / Metatranscriptome	316	Y
F044193	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_103302232	F009521	AGGTGG	MKYQIIINNGTLKGFIAFKGSCLATMQDKFKRLQNQGHKLKLIRGK
Ga0211576_103302233	F044193	AGGTGG	MIIKEYQKEYKDYFMFITVHHSLIEVSVHSYIDDDFEYRNRYIDYSVEEIYESICYRIDNNDLLEVA

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