NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10299645

Scaffold Ga0211576_10299645


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10299645 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)836
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026238Metagenome198Y
F048349Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_102996451F048349N/AFFVIICILNNVMGVTNMQNKLISNREMFRQLLARDILAVLEEFNGGTCMRLIDIKQQLQGGKACRHYMDLHTSNGHGYLSYNDRFFRAIQSINDAGYGISIRKHTNGQLWAFSTQTLKHDNWQNFLAECFREWTADYNMNAGYKLNAQLDEAVA
Ga0211576_102996452F026238N/AMGVTNMQQQYKVNNTIFNNIEDATKYVATLNKAVTISPYTPPTKASKKLSVVRNILIREMLEWAGSFVHSMTPSTDVCWMYSVEDANGFSDAGD
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Biomedical Sciences Research Center "Alexander Fleming"
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