Scaffold Ga0211576_10185640

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10185640
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1113
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018196	Metagenome / Metatranscriptome	236	N
F056050	Metagenome	138	Y
F085805	Metagenome	111	N
F092191	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_101856401	F085805	AGGAGG	MKSKSISADADSIVSGLLVCKPLADEVYKKLRMLALKDEEDFRNNRIAERHRLNNGYSKGGH
Ga0211576_101856402	F018196	AGGAGG	MTSEEIIKAVDYKKGHFNMVQYILREKPEWSISVYDIEEDRFSVEKSKDYQQIKKAIKDYQTEIVCYSKEDKRIGWAWFIPYNETDEDIVSDYSDTLTLNAWCKQFEELHRRLEVA
Ga0211576_101856403	F092191	GGAGG	MKLKQIVDITKILSDRKIPDDVIKFLDDEYYSISKKQNIKFGEMDLLHYIRVNIKDHKNLWKSYNEVEERLHKIKKIMED
Ga0211576_101856404	F056050	GGAGG	MSDKNIVKIEEFESWLEDCPVPYEQTCNGLNTTEYYSFNLIDVEFEFDREED