NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10142920

Scaffold Ga0211576_10142920


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10142920 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1299
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000499Metagenome / Metatranscriptome1074Y
F003326Metagenome / Metatranscriptome494Y
F088823Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_101429201F003326N/AMATIKEKKKLIRTIKNPNRFFRLNFSRYGGEVAMGTITKDQYEYWSDNDGFEEYMVAVDYDPTDANKKIPKRAQFDQPFYEYGNICHMSGPEWDDSQTMYIEEIDKNGKPMEDEDGNFVQDIQHDFGNFESLGAEVVCEEEHHEGSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEMDKLKIRYVNADGFKVFNDIEYNGEEYYLEEDSTGKSSSFYVG
Ga0211576_101429202F000499N/AMQKEIYKEDYFGTLMSILVDESRRMMPTFNPTKELHKIQNDMCKAGSWIDSMPIGTIVETVPQESIQKLQTDVLPEYRRLAANLIDRFISEFEAQGGRRAEITEKFESMYKWRQ
Ga0211576_101429203F088823N/AYSKTPEHDLDATFNFSAEYRQDVSGQDGKDGVNLAFNYVKKFSGACGFLWMKNPKCYNADGSKKDMKALYAAQGKEDQLTKHGLVYDLETDMFVPIKKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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