Scaffold Ga0211576_10135623

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10135623
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1340
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F020816	Metagenome / Metatranscriptome	222	N
F067760	Metagenome / Metatranscriptome	125	N
F094102	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_101356231	F004856	N/A	KKIEARYSAYLSWDLDELGIDWDEIEDWDLLRADLHITFKDGTQKVYENWQDLDIDYKHNFEEVLILDEDWHEVEGLN
Ga0211576_101356232	F020816	GGAGG	MKVYEITVSTTVQIDSEDDYCTSVEHAEDIMWDRWGVYKDDLKITNVEIWEVDDE
Ga0211576_101356234	F067760	N/A	MRVRRIDMFIMRSYGDYCDESLRYNDLQKSFKQWKNDNIKDLVKEYIKMRRLVR
Ga0211576_101356235	F094102	AGGAGG	MIDGFLTPMNKEEFRAWENYIIEYNHSNPTDQIAYEVTWNEDNYKVKLLNLKVDNEG