Scaffold Ga0211576_10088487

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10088487
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1721
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F014069	Metagenome / Metatranscriptome	266	N
F026154	Metagenome / Metatranscriptome	199	Y
F090327	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100884871	F003677	AGG	MVDEALYFFEKDVGKKVYEMEYEITYVTKWQILAEDKDQAFKIWLENHKVDIATEDGKDVVCSYVKDYTQIGSTKEIAKIKLDIDNDEVIAD
Ga0211576_100884873	F014069	AGGAGG	METVKAPINERVATKVMPLTKWFVEQYFQTFELMSSDPRFKALPPYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKAVNE
Ga0211576_100884875	F026154	AGGAG	MNGIISVVRFVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDNEYYHTKSKYIRLTKLKEEHEAYRKSRRDNS
Ga0211576_100884876	F090327	N/A	AIFDEWMKTINPFEDDSPYPLRISQITRAWEKIDNVGKHNYLTRQTNPKYKTLLNQMRGD