Scaffold Ga0211576_10084436

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10084436
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1767
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011529	Metagenome / Metatranscriptome	290	Y
F040871	Metagenome / Metatranscriptome	161	Y
F076496	Metagenome / Metatranscriptome	118	N
F096068	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100844361	F096068	GGAGG	MALLEDIVDFCKKELNIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLGFKETILTLCH
Ga0211576_100844362	F040871	AGGA	MSTTEKLELLESKLQHMGMMGQWYQRYDISEAAEESKKIIKELKTDLHEPCGMSRK
Ga0211576_100844365	F011529	GGAG	MWIKESKRKKISELEGIRLRSCRLWLDKDGFHPFLDQDDLTKPDLQKSMGCKYNELPKEAWDTMDRYDESIAKRSKYAT
Ga0211576_100844366	F076496	AGGAG	MASIKRSPEVEEFLKNGGKIKVISPEETAKTLQKQSGGYFKGQSVMGPSKKKGKTS