Scaffold Ga0211576_10068899

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10068899
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1992
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004688	Metagenome / Metatranscriptome	428	Y
F016342	Metagenome / Metatranscriptome	248	Y
F037476	Metagenome / Metatranscriptome	168	Y
F049999	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100688991	F016342	N/A	KKVKMRSKDYHALKDELLRKSIERKEIIKQSSQGNFGMYDVLPANIARTVSEACDEFFKSRNIRYGSAWFHDRNDRKKKIQQAKDERNTNS
Ga0211576_100688992	F037476	N/A	MNETPTVKLTGVFPKTFRVTKCESDRADCYFEFTDDNKKHWFQICLHGAITLHEHFTELGYTELTPKVEFPTWHPNYRK
Ga0211576_100688994	F004688	N/A	MIEKYTMPLIHMNGSDEDSLRRQYNDLFEAVSEAQVKLLYDVDFHKRDYYPLGELVWSEANLEREEIKEAMNKVYQYARQHKHYLHYGKEPLPDED
Ga0211576_100688995	F049999	AGG	MLGSISITSTMERSRCQMKIKNYLVIVEEVNRLQFEVEASSEAAAIDLVEVGEAGDPTDQRAMEFNCLSVKEYIK