Scaffold Ga0211576_10067967

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10067967
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2008
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC031P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F084722	Metagenome	112	Y
F091859	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100679674	F084722	GGAGG	MTKIYMAVKYPKNWTGKKDIKIITLEEHLKSYNSVCDNIGDKLQLFLNEDDAKKHLIKVN
Ga0211576_100679675	F002485	AGGAG	MKTQIDSKSLYFENVGDKTIYYSYNTTVAIKTPIETYVCENVWSITTAKHLNRIEELTGSDREYRMKYKHFREFCINNNINKHYN
Ga0211576_100679678	F091859	N/A	MRTKQKLDKRTRARLRELSRTESVYNLQGSNSTYRGFSIHGGKSKRCYYQAISNANQNQLANFVDSGRSQIKY