Scaffold Ga0211576_10061260

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10061260
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2129
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020898	Metagenome / Metatranscriptome	221	Y
F038091	Metagenome	166	N
F069439	Metagenome / Metatranscriptome	124	N
F077379	Metagenome	117	N
F103560	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100612601	F077379	AGCAGG	MLTQKALNKKLTATLCTTTNTIFVHKNNKAHLQYTVNSEKVIHNANAQQLQAFNSLQSTLMQKTKNFIVNNALVKQLLNN
Ga0211576_100612602	F038091	AGG	MQRITNTNTLIVVDPIMSPLFTAQLITVSSYNKLTAQTQQDISVVAYSKQAYSNAMSQSYNAQANAYVVYNVTNNLSYNRCVVTH
Ga0211576_100612603	F103560	AGGA	MPQFGFTVINYNTLLIVNCTTQEQRYANNVTLPSLYAVTQKQLAKLFKTAT
Ga0211576_100612604	F069439	AGGAG	MQKIQNTQFTISTNKMFNNSIFIKTNAKNNLTYMCSSIEKVALCLQAHNLKNATVKFASNFLINKNMLQTNLAHATYIRIANA
Ga0211576_100612605	F020898	GAGG	MQKVKVSLNKRVNNLTAKLMQNTNEFVMQEATKNSCNSIYKNFNYSNKTRCADGDEIHFTAQMYNKFYTGRLCMLTFKNDSFVAMHTID