Scaffold Ga0211576_10049991

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10049991
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2393
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005537	Metagenome / Metatranscriptome	397	Y
F043149	Metagenome / Metatranscriptome	157	N
F070551	Metagenome / Metatranscriptome	123	Y
F071633	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100499913	F043149	AGGAG	MSLRNSNTRLYNKLEKAHREVYAAKDKGRQCVRTLKAFKEYNQVFRRIVELENKDARFLY
Ga0211576_100499916	F005537	AGG	MSDNVKFISEIERLLKQKQDDYGEFDHTSYVMSGILEKYLSVYNNCEVKVPLKLFGIFMIFLKLWRVMQSDNYKKDSFDDINGYAELLRRLVINEQEKR
Ga0211576_100499917	F071633	N/A	LKVVFLILVIYTGDGNLKYEKIPFAYSLLPITCDEMYEKNVKYVENPNYKEGNGEVWVLTKYKNQNVMAHYCKDEKGNYVR
Ga0211576_100499918	F070551	N/A	GDDKFTGEMNYSEAGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIPF