Scaffold Ga0211576_10045530

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10045530
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2527
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030088	Metagenome	186	Y
F039588	Metagenome	163	Y
F047679	Metagenome	149	N
F082690	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100455303	F039588	N/A	MEDLKFKTAEQVMKHTNTPDRNADFYTNTNKGFAMAINGFRISVQWGPGNYVDGEIRNSDYDAPMQHSIWGCDTAEVMIWDRNDDPLFNLVPIDHDTNKHDKEKLDANGGHTDQVFGHCNSDCVARIISTLVNCGDENPLRAIAQIYNASFMEA
Ga0211576_100455305	F030088	N/A	MGFKLNIVTKTKMSAKEMSRTLITLNQSEVFKMGRKIYVPFSAVSVVFNSKGATRKFDKDLDSITHPTRGKLFCLPSNVEQFIKVV
Ga0211576_100455306	F047679	GGA	MTNLETSTAPLVADQEGDHYFMVGETVYYLNEFMKTLGDRDFDGVAHITNQGGIGIKVDEANEEVEYTIFTASY
Ga0211576_100455307	F082690	N/A	MSKECVMCGGDAGEYGNNPAPLFNEGVCCDSCNMEVVMTRVMINRVGRNMEQ