NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10041215

Scaffold Ga0211576_10041215


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10041215 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2680
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008049Metagenome340Y
F010274Metagenome / Metatranscriptome306Y
F092861Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_100412154F092861GGGGGMRRSELIARLNGLRHELESMEDDDGWNLETVETCLYYFIDEEDADPHWE
Ga0211576_100412155F010274GAGGMNRRNEIMNALEKMVDALYEVGHEDSQYFEEVIGETMDLVMERD
Ga0211576_100412157F008049AGGMSKHNHLVWDDFLLCIGMELAYTRNGENPINEQKIAEKMMELNGGEF

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