Scaffold Ga0211576_10036037

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10036037
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2897
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030886	Metagenome	184	Y
F052942	Metagenome	142	Y
F059942	Metagenome	133	Y
F070089	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100360371	F052942	GAGG	VLSYISKELEMKVWVMQGSYEGETFSSVHFTQKGCALACIADVLEFHGVDD
Ga0211576_1003603710	F030886	AGGA	MSYHGNPPPDYNQVGIAVVNPLHRIEQKLKKVQDILDNISDASVLTANDLKIKIQRVMDG
Ga0211576_100360374	F070089	N/A	VKVGDLVKFESVLNDSMDHYTVEHGLVIQLSKTGHDTLSAQVLFNDGETWWVDSGRLEVISESR
Ga0211576_100360376	F059942	GAG	MKAGDLISFKPINFGLEDWSNPSIVVNEYESPNEGLWAIWCDGVYCVIDDDNYEIVHLTS