Scaffold Ga0211576_10027800

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10027800
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3366
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F019151	Metagenome	231	Y
F024570	Metagenome	205	Y
F031530	Metagenome	182	Y
F033836	Metagenome	176	Y
F066845	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1002780011	F033836	GGA	MTISEYEFFGVDSSYANAKNTRDTISAGIPATREPEEETNTKERFTIMVKETEIKSVALCTLALLAGLCCALMLGCSTSAKVEGGAEIIELKPLKMQELTYPVHDYSKICADCGFGEWTDSWCEAHMGEAAFCSASK
Ga0211576_1002780013	F031530	GGAG	MDFVVYKSEADNQGRLVELVHNKHCEVYEVIVDGIPVFNCTDYEQAEHEFKMECV
Ga0211576_1002780014	F007343	AGGAG	MKVSDLQPARFPASPSVELPNSDAHRLFTNDFNKNSFIEANGDVEIVWNNQYKYWTVPAFAESRAAYGEAKQRFCDQHGSE
Ga0211576_100278005	F019151	AGGA	MIIANARARDGLELFDNDGVQAFEMKNETLKMCADEDGSLWNSVRSLTLRDAEGNALFSLSWSETGVCGSLHDDELTVEIEEEF
Ga0211576_100278008	F024570	AGG	MAYVAYEIRQTKETATGTRHLVRCNRLGKYAICSWVGSTGSAMGTVECQGDYKYVMKKWKKIQRKRQPVT
Ga0211576_100278009	F066845	AGGAG	MMNNRKKAIAMHNASKKRFADIFTGCLAHGTLKQTQKKIKTFKLKKG