Scaffold Ga0211576_10024019

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10024019
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3659
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008236	Metagenome / Metatranscriptome	336	Y
F019643	Metagenome / Metatranscriptome	228	Y
F052546	Metagenome	142	Y
F060890	Metagenome	132	Y
F065685	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1002401910	F008236	N/A	DPKLSRILGKYITMYASVHNHDDVKKAKAAGFTLFAWCDSDEKIATKRPRGKKKADQWRSDLPKLIVLGDDKYVTCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH
Ga0211576_100240194	F052546	GGAG	MRRIVRPTPMIKNYINTAAILILTSIIFSGCAIIPNRNVLSLNKTIELDERAVEDINVGLRFEWIR
Ga0211576_100240196	F065685	AGGAG	MKPVVGIGSNTKYGRVLKIQRNGVVVENGRGERETVSFRKIENQLKGSEK
Ga0211576_100240198	F060890	AGGA	MIDSMKLTKHDYEMIADILDAHYEDTVELQKNHYLNDDTDYFKQLEYLEELIDKTVYMIGVCSAQEE
Ga0211576_100240199	F019643	AGGAG	MAKYYIKSGTLEIIFSTDKEPYDACRRVIHECNSNDELDEYMYLDERGYRDYTSADTTTFVVDSEQILRKEGYIK