Scaffold Ga0211576_10023921

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10023921
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3667
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019393	Metagenome	230	Y
F048575	Metagenome	148	N
F059361	Metagenome	134	Y
F083382	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1002392112	F059361	AGGAG	MIDDAITTVGFALQSHVNTCYHEDTEENRAEREELILAWSIIRSHLDMSDDMPEDNLQPQRGH
Ga0211576_100239217	F048575	AGGAGG	MTALQNSIILDEEYEYEVSVVDLWESQGIEEPYDAIAVAMNTLAYPNPNVPDEEIEEHLSELWEEKWHHHYV
Ga0211576_100239218	F019393	N/A	MYKEIETYKDVDSFIEAHDGLWQMLGAKYKKLDEETVVIDNTTWKLKKGNMSCLK
Ga0211576_100239219	F083382	N/A	METKERKHVMPKVDRDTLVSVDDAGDVAKKEYESYIKQQEEVVDDLDNQEYSEGEKYD