Scaffold Ga0211576_10023575

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10023575
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3696
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006959	Metagenome / Metatranscriptome	361	Y
F008851	Metagenome / Metatranscriptome	327	Y
F026125	Metagenome / Metatranscriptome	199	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100235754	F008851	AGGAG	MNKYKMVDNYSSTEGTLYAGDVLKEDNNNTLEGHKRLRDSMGRVWFVPHKYIVRK
Ga0211576_100235756	F026125	AGGAG	MANYINSWKSRKSEKWNIEVRLGRLTLLQLNYNANQSKFRFMILNIGFELGGK
Ga0211576_100235757	F006959	AGTAGG	MYYEVQVVFTEEIPTKNGFREKKSRKTFLVECVSVSIAETKVNEFLKDSPFEFEVKLAKESKIVGVIENG