Scaffold Ga0211576

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10017273 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020438 Open in IMG/M

Scaffold ID

Ga0211576_10017273 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4432
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4432

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (68.75%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)	Depth (m)	45
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4118

Long. (^o)

-127.7122

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003169	Metagenome / Metatranscriptome	504	Y
F003920	Metagenome / Metatranscriptome	462	Y
F004488	Metagenome / Metatranscriptome	436	Y
F004715	Metagenome / Metatranscriptome	427	Y
F018008	Metagenome / Metatranscriptome	237	Y
F018079	Metagenome / Metatranscriptome	237	N
F028002	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1001727313	F004715	AGGA	MIYTDQEHEWLSKPAKKKRVSNQTADGSAPIEEDDRLWQRCWGIQTTIEVDGKRYTVPIQ
Ga0211576_1001727315	F003920	N/A	MLVRTVILYAVMTVCAVAFHEHTYAVWELKEDLQIRIMNLWELLQQLEYVDPDQRIMVYEEITHIRQDIERIVNLLIQHDQQQHP
Ga0211576_1001727316	F003169	GGTGG	MAMIKYPLYKKNNSRKNTLLYPGLTTVSLDRIITYMQYYYVMCQKGSLVHRCYVQLDPESADILHDSLEQRYDLVQVCDVPDSSVEPDTLIAPAP
Ga0211576_100172733	F018008	AGG	MEFLNSKKFIIMMLIVLVWMALSSCSPTEYADHQPPHETDQEMNAEITKDMEAMDREKAQADNPQPADFESIVDALGCMFDPSDCPLKKSKDEQKMDR
Ga0211576_100172734	F028002	AGGAGG	MKKVIDEIKKHKKATIGVAVIVLVFAWMLITNEPAPVEAQ
Ga0211576_100172736	F004488	GGAGG	MFARLRGWFETWKQNLFDAYDPPKPTVYKLGQKKYVKVKRLRTSSKAKGPYIK
Ga0211576_100172737	F018079	N/A	MYTLEKRKMIYIISRRPTWFHTHCLTPTPGTPLWFDPTWVVGDCELCRMDIDNQDWWNNCSYNQSQRKFYDLIEKDLKVWI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211576_10017273

Overview

Ecosystem & Geography

Associated Families

Sequences