Scaffold Ga0211576

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10015023 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020438 Open in IMG/M

Scaffold ID

Ga0211576_10015023 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4799
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4799

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)	Depth (m)	45
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4118

Long. (^o)

-127.7122

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042021	Metagenome	159	Y
F043087	Metagenome	157	N
F097668	Metagenome	104	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100150235	F042021	GGAG	MDIESIKKQEELWKDVVLKGEMLTIKLITEEAKKELEERIANFLIARKEAITANKSIFIFRDKEYTIDTDNVDIAIKTWANTQSIGVHRALLAYRKAETNAWIYKTLLDKKKTGMFKACKKLVLIGSGIYPYSMFDIHKKYKHIQQIGIEIDTNRAAIGRDLVVKSPAKNHIEIITCDGCDYDYSDLGEDDLVFVSCDVDNKKIMNRVIETCKAHIFICAPYEKTWLRALVQNVKIAKHSGIISYTEHS
Ga0211576_100150236	F043087	AGGA	MSVGFLTQYYRGLGHSQRIKFIAEKTAEYTDVVIMDQLFRPPIEYSVPHIAFLGDYTLPDINKVFQFIQQPAMINFRIRQFIETIEKHKVKVLVCEGFPFCRQQFAHEYFRYLEECKKRGIKIVISVRDFPWDEPHNNQLQDWVLYTQNIVCKYYAEYILVHGDKKLLPLISDRTKQANSVQIIKDIEHLVQYTGYVCDEEQPVHKQKDNNIYVSTGLNKDEAVLIFKKIAEIAHHYPDHKFIMPIANKYNSMGGRRNKNIYLVEYVPELRKKLTTCAAYITYGGYNATVEILKGQIPSILVPRQSGKKMEQFIRAFTFEPYDFYKVLTLSEFDSIKIVLDEVLGGYKPQPFEFNLEGASNTAKFLSEMHNGY
Ga0211576_100150238	F097668	AGGAG	LIDYRICEIDIEKSTTALYLEKTYSCEWGFDQNSTIDPFFVLRACITKPVSFAVGKMIPIPTGIYPQIKNPNFGIDVRSFSELVYEQGIVLADGISTFEYTFRNEMWLLLQNNSKQVQTLQPTQKVATFSVSHRPRMVINYVDQIEDSDFKNSSAKSYIQKIKKKISPEVYDLKHGKPPLEDINYSRETIKKYKKGGIGTHGLDDYVTDVELVQEDEIEEVTGVKPSES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211576_10015023

Overview

Ecosystem & Geography

Associated Families

Sequences