Scaffold Ga0211576_10013966

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10013966
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5005
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F012507	Metagenome	280	Y
F014672	Metagenome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1001396610	F012507	N/A	MWTDKLKIGDLVWSRRDNKPAIILDSEETARAKYGDIANKRMRFRLHIDGQQGWLDEVKLRALYKLP
Ga0211576_100139663	F008590	GAGG	MKVGDLVTYAFQRSRWRKGESVSLGLIVETGKYTANRDVKVLWTDQTEPETETSQHLSLVDDSLTT
Ga0211576_100139666	F009562	AGGAG	MLTIPLIRTEEMNLTPIERSAMRCEQVITAMMMQATIADPTITPQEVDTFTTLSVATITPAEA
Ga0211576_100139667	F014672	N/A	MSRFKPGDLVRIKDGTNQAEIPDHRVGMIVEVGETSKSYTKAYTVIFLGTDVQLKFHAMFLEHFTTP