Scaffold Ga0211576_10012046

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10012046
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5436
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → unclassified Tardiphaga → Tardiphaga sp. vice304 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044550	Metagenome	154	N
F067840	Metagenome	125	N
F073669	Metagenome	120	N
F101313	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1001204614	F067840	N/A	MVKKFQKHYRQTKKTIYTVYDILSFVVIILSFDKLLSSKSRSVDPQQVARLIEKLPRIKKILYDSAPWWAFNDLDIKSK
Ga0211576_1001204616	F073669	N/A	MIEPNMKLLEVMRDEANLCYKKGDKENGNALVESIFAQIFPGLVEAAKNDPKIIYQLIIQANASDGVIAEHSKSILAYLKSKGVNL
Ga0211576_100120462	F044550	GGA	MTRKIVRAKKLYYLILDDEAKYCLLKLDTEAKDYVELDHDLDLFALSRLLFQQDNDNYHKTSSKKE
Ga0211576_100120467	F101313	N/A	MGSTALKREFKIGDEVCHTNKFSTGNNFQKRRQGVVLALEKRPVKGGKLRSYIKVLWNTSSVPCFHASHALLLLSEREKAIEEASKFIA