NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10011618

Scaffold Ga0211576_10011618


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10011618 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5549
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014683Metagenome / Metatranscriptome261Y
F037097Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1001161810F014683AGGAGVDNTVPAKRKFTYTLSIECASEGNADLDAVENILDLHFQDLVMDDTFVNELDESQSVTIQVVPNFGKK
Ga0211576_1001161815F037097AGGAGMKAFEQAIEAINKIDSVEEIRDLFDAIRLRQTFLGNKTIRALATGDNVSFNGKNGHTKGTVKKINRKYVLVDTARGQWRVPATMLTKEDSYA

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