NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10011413

Scaffold Ga0211576_10011413


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10011413 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5608
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087027Metagenome110Y
F103392Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1001141310F087027AGGAGMNLQEMIDDNIAVLDAESNHQEMLAKEKQERQREALKELYGEIQHTIKEAGYHIALYKQNKVFAKKWRTHEETWERSDEKVWMIQIEFEDSRPLKNTGESESFYSPSSKYAGQHCGGSASAYIKIVWDDDKGLYHIIPNVAFAVNKEVKELDPLTYQELKGTKEMIIERLAIVLANAMQYEKREAACFAKHQAWKESLNG
Ga0211576_100114139F103392AGGAGMAKVVIELEFDASNGRKVLNCDVWDYLEDLIEDESLDYTVYDGDETYGVLDYQEIER

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