Scaffold Ga0211576_10011067

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10011067
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5704
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → unclassified Nitrospinaceae → Nitrospinaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038639	Metagenome	165	Y
F080023	Metagenome / Metatranscriptome	115	Y
F082546	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100110676	F080023	AGGAG	MSKIFTIQIAPVRAPYMREKQRVENTVCKKYVRGKVVYHEFRWNSPKAGRNVMYFDTPDTEAEKEPYAEKFAQRVQRAFDKAVIRFHTHYKGFRQEDEIVRVYAPYPDLAPNALITVYSAKVHEYRAHQAFLRDIVSKMNIQYRGLMGLLQRGQWDLSKDSLYLLNKYMFDLQSMCRPDHHEVVFKGDKNPLLANRR
Ga0211576_100110677	F082546	GAGG	MKIESKAIIRRRIGNIERDIKNVRNSGDTFRMIILYRQLTANLIKLENMKN
Ga0211576_100110679	F038639	GAGG	MKHAKQKTLSQSTIDLLSRMSKLVDQGLTPDDAVEWMTEVEPQWRCSKGYTASKGGLRQAKQRLVRRIEMMKQVNNGVTTFINNKPKQ