Scaffold Ga0211576_10010102

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10010102
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6004
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F038864	Metagenome	165	Y
F046420	Metagenome	151	Y
F068825	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1001010210	F000126	N/A	MRDFNITRNKGEWYYTVVTDSYGKKYDNYFEHAHEANDWVYYIWEKEEWFNSANSQELLYNAIENCKKLDKNNNNLRNIL
Ga0211576_1001010213	F046420	N/A	MKFEHEILFNNDDLYYLTSTTNYLNDNDKQFLIDELINLNNIKSINTYKI
Ga0211576_100101025	F038864	AGG	MKIDKTLIVEALSLYKAELVKRDISEHDNTLDILIKVNEQIKTIKQYKPNTNANG
Ga0211576_100101027	F068825	N/A	MQTIKFLKPDMVTGKQKIQLNGITYKPYTICQLADTKFGEVDNDGFSLITDWFNYKGFTYVAV