NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10009471

Scaffold Ga0211576_10009471


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10009471 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6218
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025718Metagenome200Y
F060426Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000947113F060426N/AMIKNDTQLKGFDDLTFGQHGGFTQGKARQARLTFGHRDKDNQDQFTISVVQNLNDGTGLYGHIDDNTYEVAMWFQDRDTMLPLSKYDDVLAHQTPDQVTKLMHQAQLNDFAWVTLLHKLRDDHRKDLDLD
Ga0211576_100094713F025718N/AMVKDNKVNGFIAKVNIVDRKTGEVISKNVMMKSEHHSSIEALNADLAKFGLPRKFELVEWIA

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