Scaffold Ga0211576

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10008674 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020438 Open in IMG/M

Scaffold ID

Ga0211576_10008674 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6540
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (78.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6540

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (78.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)	Depth (m)	45
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4118

Long. (^o)

-127.7122

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F018286	Metagenome	236	Y
F031249	Metagenome	183	Y
F041168	Metagenome	160	Y
F057352	Metagenome	136	Y
F074757	Metagenome	119	Y
F094548	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000867413	F074757	GAGG	MRVGDLVTLSSYCLQRADMFWWRQKIWFDKMTLVGLVVRVEDNPWQSKRECSTNEKTFYYINWMQNGPGSRYGKTYHQTDGYFLRNDLKFVKKGDFK
Ga0211576_1000867415	F057352	AGGAG	MKLWVLHGTYESEMFTSIHLTEKGCALAAIADIMDFLSVTDEESALQVINDCYAYTETDGKQTEAFEWDHDKMKEMSSKDLWKIFADWTETCWERMSDRSYYIDATPQMVQA
Ga0211576_100086742	F094548	AGGAG	MIKVGSMVQSKYRLSSGKEGNLGLVMELRSNDAYVHVYYPKTRTFGWVVAKDMKVVA
Ga0211576_1000867420	F018286	GGAG	MNMLTTFILVGMIDSFDSHFATVELNTTPESNGGPATAVMPVSAFPCEIYEGKVFYIVKLYENEDATIVCQRDIDSEPGRRKTD
Ga0211576_1000867426	F041168	GAG	MKQAKVKRHTVGFFRNDAEVPFINLEMFETITAATSIPHYWRDGDGNVSQFWHAGKIPKGTGVSCTHRERGMKHTFWTVTDPESELVGKVFVIGHTFKDRKEYDFDKFEYSNVSPTLKYSILAERPLTK
Ga0211576_100086745	F031249	AGGAG	MTKVGDLVRVRTKHYGEKLGVVIEVDEDGIHVKPQNHPRNILALPKDVKVLVSV
Ga0211576_100086749	F004771	N/A	MSRIKKGDLVRMSTHNTGLVGIVMGRYPKHTDTGPMQIGILWTGGSGKIDWEPEGWLEVVSSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211576_10008674

Overview

Ecosystem & Geography

Associated Families

Sequences