Basic Information | |
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Taxon OID | 3300020438 Open in IMG/M |
Scaffold ID | Ga0211576_10007930 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6891 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (22.22%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_133 | |||||||
Coordinates | Lat. (o) | 35.4118 | Long. (o) | -127.7122 | Alt. (m) | Depth (m) | 45 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004489 | Metagenome / Metatranscriptome | 436 | Y |
F031863 | Metagenome / Metatranscriptome | 181 | Y |
F056582 | Metagenome / Metatranscriptome | 137 | Y |
F057337 | Metagenome / Metatranscriptome | 136 | N |
F071664 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211576_1000793011 | F057337 | N/A | MTYSELSTMTIEDLRTLNSMVVETIKSKKSLLALEKKDSLYVGAIVSVDHPKMAGHELKVTKINRTKAVCELINGMGSYNVPLNMINIING |
Ga0211576_1000793012 | F056582 | GGA | MARYKTYKIEKTPTEKFTEMVTISKKIKGQIVERKFIDEQKAKAWIEFGAAHKLISNGAKKVKNELGSIGIVTETAW |
Ga0211576_100079305 | F004489 | N/A | MNPVACIKAINKVKTSVEGNDPRGWMKACAKETLLKMGNEHDFKQCLLRKINSTKQHIENPEGYVNMLYHQIEGKCS |
Ga0211576_100079308 | F071664 | N/A | MIKKIKSKLLTYLFTDWVKSETDLETLKLTTQMLKNREIQITGIKPVLGFRSHTTTSVQ |
Ga0211576_100079309 | F031863 | N/A | MFRKLLPVGNELYVVKRKFKIEHWEKIVKHFGAKEVCEAYHCETILRGRDGYFYLCDKVDDAEIV |
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