Scaffold Ga0211576_10006299

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10006299
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7878
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009636	Metagenome / Metatranscriptome	315	Y
F010201	Metagenome / Metatranscriptome	307	Y
F031710	Metagenome / Metatranscriptome	182	Y
F036740	Metagenome / Metatranscriptome	169	Y
F051968	Metagenome	143	Y
F056678	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000629910	F031710	GGAG	MTGLEFSLVATPILAGFFYFGKRQGKKEKIEHIIDHTLTQLEKNNMIKVKVDKNGEKEILPLDKYQKVW
Ga0211576_1000629914	F009636	GGAG	MGYFYQDWKEKKMFVENTDGQFVMNFGEAEKSMIQNLEDAVINLTEGASDEKRMAIGYMEYLADCLKKGKLEVKWNIS
Ga0211576_1000629915	F051968	GAGG	MNIEKVTNMMCDFVAYVDDFYNEKSGIYPIKGMTDMMVIKAVQKHVANVGMDFCADSVDREWVRDIILADNDLKWGV
Ga0211576_1000629916	F056678	GAG	MKNETIFIDAIEGAKVAVFKGAGNMIGTAKDAKMLAYILDTHKIFGEVMFCSTMDFADEVGFATHDGAKKIWDAAVGMRG
Ga0211576_1000629918	F036740	AGGAG	MSIGLVIRYTYQETCEICDEIAHYLKVVGSKFNAFFTRLGYARAASQLARMGYYEEAKALMTEKDKMK
Ga0211576_100062999	F010201	AGG	VIYETLDEAVEAALVMCDALETVVKITECKGGYELFGTGKFVKEITG