NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211576_10006264

Scaffold Ga0211576_10006264


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10006264 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7896
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017322Metagenome241Y
F039876Metagenome163Y
F048970Metagenome147Y
F077384Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000626411F048970AGGAMKIKLERLKEIVHGVVTEAAKEGVIQKIYKLSFDKMIKKAASGGNKNTPPFTKKAAMAGKSGLSKG
Ga0211576_1000626413F017322GGAMKLLMEQWRKFLKEGISDVVYHYTSGLEKGAKILEQNRFMASGGFTKDVESELGKGKLYYFSTARTPANAYTGNYPQGVIFRLDGRALAQKYKGVPLDYWATKKRSSKKAANLDPGETEGFEAEDRILLDEPYIEDADRYIDEIHFAIPLYRFEKGMFDDEPKRKAGSSIEAYTMKGLRDGVAIAEQRNIPYYIHIDKQTFPFVEVGKKKALTSLAAFMEEVEKSGVTVNEPRDQASVYTSRKGAEFGEDEVFLYVQAAQDILAGKERFEGANVKDKVGYKEESERKREGTVMFRNLTGAPNMQGRFYREIDNPLHNVSSNPKARKTLEMLASLMRSTKQKTIKDFETYLNQVYKQNHGD
Ga0211576_100062645F077384GGAMFQKGDFIVEYQRVDRTGGVKFGVVMGAEKGFQDMIVLDVVFPTERLYTFASHCQPYKEWLDENSF
Ga0211576_100062648F039876GGAGGMMFKSLFLLIFANMFNQAYQMQNINCPRWVPGTNQVLPRGVTLSPELELKNRVRCYCEVVMSKEQECISNNIPKNLCKARTAAWVEDNLMLRENFRRTQQAGPVPQRDRMINVEP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.