Basic Information | |
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Taxon OID | 3300020438 Open in IMG/M |
Scaffold ID | Ga0211576_10005863 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8201 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (13.79%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_133 | |||||||
Coordinates | Lat. (o) | 35.4118 | Long. (o) | -127.7122 | Alt. (m) | Depth (m) | 45 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020790 | Metagenome / Metatranscriptome | 222 | Y |
F040861 | Metagenome / Metatranscriptome | 161 | N |
F048411 | Metagenome | 148 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211576_1000586312 | F048411 | N/A | MKMTINWNDGTYKFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ |
Ga0211576_1000586322 | F040861 | N/A | MLETLKPIKTTPTGIYFRMADGRIGYANHQYARVSVTREGIRNGEYYKEDNEIGDRLYQINKKVNYPHHEIPSMNMIGRVRYNDISEAINALQNFNNKNCGEYAVELRKNKILKQYEEHKALNIKSYLTKERVKEADTYVEGYNEGFSDGVASIEDKLNKLLNNL |
Ga0211576_1000586323 | F020790 | N/A | MRISKQMMDDKLLQIATFEEEYGKDHGITRVNAMKKYCSNKQYRQRVHAFNKASVNTIKNYFKLI |
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