Scaffold Ga0211576_10005184

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10005184
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8802
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009243	Metagenome / Metatranscriptome	321	Y
F019396	Metagenome	230	Y
F048972	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000518411	F048972	AGG	MKNLGVCNTIDWDSVIEQCASVEPEFVGPSHKRGDNIPGLDPILDMWEEAGIKTVHEGGTAGWDMFIPGKQFDESVVNAWNTYYGLECNNVWISRVWPGRFAPIHWDVHDDEVNLPDSPRYHCHIGKPHWGHIFIADEELFYNQPQGTTWQWTDRKIWHAGTNCGTQPKYIWNAW
Ga0211576_1000518413	F019396	GGA	MKWNSYLKLDSIGSPCMAQQTYEPLVSEDGKTFCKNYSFPNEYQYRDIKDRPLYTKEVVDWFFQNELAFIEYFKSKPYAPEVKDIDYANQKIYLKWYSESCNQVMYSGRDWPQAQWRKQIRDIIIDQYDEGVYKLTMYPHCHYIDNNDNMRAIDWYGCVPVDEPFIEEKYMQGIIHETAQFRLDETGKPIEDKLNLEIMFQRSLSTHVLWGDQDMSYIYKELFNA
Ga0211576_100051845	F009243	N/A	MSNNFEYYYNTVPGKGQCRNNLIYTSLISKDKKTFCQWYYNDEQYHGGHNQVVDPELMESKWLREINFIQLMESKYPQHVPEIQDIDFINRKLFLKIDGPDMWELAGCQGKDYSVVDNWQEQMLDIIQAHKTLGIYKYSMHPSSYFVVDGTLKSINYFFCYQDTDLPISLKSVMSHISEDRQQDLLPKMTEAGIDVNTPTDHVQIQRLAFDSFKTNFPDDVMEKAKDIYA