Scaffold Ga0211576_10005075

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10005075
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8912
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010910	Metagenome / Metatranscriptome	297	Y
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F032992	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000507510	F010910	GGAG	MLTIYTIFGMMIGFEGYDNGKVYFGVYTPNCEYGYVMTAEEIYLDTIFEKK
Ga0211576_1000507513	F032992	AGGA	MNNAMDPNFRYYDCKNIIDETTGEEQDLTIMVAVPKIDLSTAENRQENRVAISGIVEQQYRNGVDSFTYEEYTGE
Ga0211576_100050754	F012114	AGGAG	MSYNNCIMPKVRKNVWVVYDLDGNKIGEVGAMTESEARQLVQHHVLIPFRLSHIEE
Ga0211576_100050755	F018906	AGGAG	LKTCKVNPLKLNSTRFNTQAHREQGRYVKRYYFSNGLGASIALHDGTYGGQHGYFELAILKYEHGTDPEQTSEIIYDTPINEALGCVDVIGWLDFHEVASKLQEIRNYNTGDYDYE