Scaffold Ga0211576

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10004342 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020438 Open in IMG/M

Scaffold ID

Ga0211576_10004342 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9730
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (61.11%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9730

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (61.11%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)	Depth (m)	45
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4118

Long. (^o)

-127.7122

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F002093	Metagenome / Metatranscriptome	594	Y
F010001	Metagenome / Metatranscriptome	310	Y
F023711	Metagenome / Metatranscriptome	209	Y
F035123	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000434211	F002093	AGGAG	MAYDTSLPAGGPANFVSPNTAHEADGVEVDFITVDYISDVSGEVTNPRASAATGALELAMQAIQNQGVNILGKGVLSNSDTEQTYMVRRDSLDTISDTTTVAAIQAAVRALNAMTPDKVTANISSATAADRDMGDTSVGA
Ga0211576_1000434212	F035123	GAG	MLDHASKYEIKTMSMDEIQPASIYEEIPDRDVLEADIASGEMDYPLMLLPMTQDYWKNIHLEYYKRGSPTLPDEAPEKDGQVLVVWKGRQRYQLAQELGYTHIDCVIEPELHKIVEKAKP
Ga0211576_1000434218	F023711	AGGA	MAPKNKSELVKQIEAYGLKGKLADLAHKEQARRPFRHLPKQFSKGILIGNIAIVPKKHTGTRYVYVIADMMEA
Ga0211576_100043423	F010001	AGAAG	MQDKASKDEVRLLLAQIGNLEVQVADYQQIVKELSDKLSVYEKKYGTVFVSSRNTSDQK
Ga0211576_100043424	F000464	N/A	MVFTSYYSRIIVKVYWPIHIYFVMRMNRQQKIRMYSHHDHDMDFEDEFWPIMGILLAILGVWTGIIHLIDYLTIDQIPWWAEPFTITPVIFLIIMKEHYDSLNPLHWWPMFWGYEAKLPDEDRITIRPLDTERIMQQHGGRLNVYIVDYEHIKFRRKKDAVIFGLRYF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211576_10004342

Overview

Ecosystem & Geography

Associated Families

Sequences