Scaffold Ga0211576_10003536

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10003536
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10902
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F013574	Metagenome / Metatranscriptome	270	Y
F014553	Metagenome / Metatranscriptome	262	Y
F031127	Metagenome	183	Y
F053286	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000353617	F014553	AGGA	MSKKSKGQWKDYKTFTLSDGTKFLARDEKDAKLYKEKVGDK
Ga0211576_1000353620	F003091	GGAG	MSTHPMKPITKPGEGKKRQKYVTQERYLEERYEISRGLKGPKRLENESFEDFHTRRKAENGLLKEYLRGVWIKKED
Ga0211576_1000353632	F013574	GGAG	MDITKIIQTLSEALDDKDWDLVKELLEELIYEDDNPIQEYEKDKDVDNENLWG
Ga0211576_100035367	F031127	N/A	MLKKEKTMNLNEWLETTEFTTKDLALLPSVGCVINTKNGDTFPMMEDDSIGFDEPMNIIEMYNDPFNSEEWFNSLHTCDKPVVNEVLNNLLPNEVKEI
Ga0211576_100035369	F053286	GGAG	MNYNETLYGKQYLLGTDVYEDGKHKILNVPLIDLMDRNGFIPEGKYNEIYNLSVVWYEVNEEIFVESIYDTDSGETYWTDKPANEWTDNDDELLTALLMYGNLQETIGENYV