NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10003183

Scaffold Ga0211576_10003183


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10003183 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11548
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000983Metagenome / Metatranscriptome814Y
F064879Metagenome128N
F099870Metagenome103N
F105865Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000318310F105865AGGAGMKITKKKVGLGVAVIIALGILWTVLQPAPAEAADVDFTFGAEKKVNANTNKMYLDSSVDLPLGVKGTSGVNYSVDNSLDATFDSFELDFSKGLNEKISVYSQSDFDLNLDHTDTTIGFKFKF
Ga0211576_1000318312F064879N/AMKLKEYIKWANNLDEYQDSATLADLNAWGFEVMPGSYRIPKLNLNNATKGTEGYDSIRNDLISNWAKVTFPFLKCLDAKIQIQRPRESCKPHLDFLGDYLENVCESMPGLLNVEHTLEKPGIDVWRMFVAIEDHVDGHIFAVNNKEWKWTKGQCMRLNNWQALHWTKNDSDQDRVIIKITGIK
Ga0211576_100031834F099870N/AMDWNKILSSNCAVYKIGSRVVYPIFRCGFTSIRDSADKKYVNSKIKFKNIDVLIRDPGDRFMSGVNEYARQNKVDVEDTWNLIAENKLVDKHFAPQYVWLMHLYKFHKGKVTLYPFTDIKKFTKLHKGRWSRKSKEEKMPLAQVEEFVEKDFTLLDHLNKTIELDKLLKYVLS
Ga0211576_100031837F000983N/AMKSYHILDCDKQQKIADSLYGYYVGITANREPKEFWNHLSRKEIQDYFSIPNNPCKEWFDSLGLKVRDMSFTIYNEDIGTDIHRDEPPVIAKINFPVLNTKDTYNVWFDDYANEIDRVECDKPIVLRSDILHTVEIGKDAVFPRIQFSFCFYNEPLQLLKLDTQ
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