Scaffold Ga0211576_10003180

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10003180
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11553
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023217	Metagenome / Metatranscriptome	211	Y
F047318	Metagenome	150	Y
F071306	Metagenome	122	Y
F084709	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000318015	F084709	GGA	MTKTKYNVGGVIVETDGSYENKFRVLRMAMDNWSKKNAGISIDSPKGRQYSTDWDRYLKLNELFKFHKPDFIKKKHMIEVNGLYRRYNG
Ga0211576_100031802	F023217	GGA	MKKWKTPKAIASQKKIDKGLAAFGKSIGLDKPFFAAQTFDDTSGTWKICPCCGGDSIIADFI
Ga0211576_100031805	F047318	GGA	MKKTKTKNTPVKYTEKALAYFQEMNDQDEFMTEPVNGDYVDYLLGDMGNNSYQGTQMDTEFEDLGDDSDWFMD
Ga0211576_100031809	F071306	AGGA	MTYREYKPTWLEQKIFVDTYGRDYNLSDVPMTYMTREQAYDKRGLSDEEIDVIYEKWISEQEENE